Personal Genome Project UK — UKFCACC7

This page documents the dataset used in the Genetase demo.

Dataset source

Project: Personal Genome Project UK
Data portal: https://www.personalgenomes.org.uk/data/

PGP-UK ID: UKFCACC7
WGS: ERX2179492
VCF: ERZ1065952
Identifier: ERS1176583

PGP report: https://my.personalgenomes.org.uk/profile/UKFCACC7

Phenotype Data (copied from PGP)

General Questionnaire

1. PGP-UK ID
UKFCACC7
2. Sex (from birth)
Male
3. Gender
Male
4. Date of Birth
17/09/1989
5. Have you ever smoked?
Yes
6. Do you currently smoke?
No
7. Age stopped smoking
23
8. Age started smoking
16
9. Cigarettes per day
10
10. Blood type
AB
11. Rh factor
+
12. Handedness
Right
13. Weight
92
14. Height
180
15. Natural hair colour
Black
16. Hair details
It's black but turns light under sunlight my bread almost turns ginger under light
17. Right eye colour
Brown
18. Right eye details
Dark brown
19. Left eye colour
Brown
20. Left eye details
Dark brown same as right
21. Additional information
I was born with bilateral clubfeet, also had an apandectomy at 16

VCF generation

PGP-UK provided a gVCF with identifier ERS1176583 (ERS1176587_noHLA.vcf.gz).

To obtain the VCF used in the Genetase analysis the following filters were applied:

MIN_DP = 20 MIN_GQ = 50 AB_HET_MIN = 0.3 AB_HET_MAX = 0.7

Filtered VCF used in the Genetase demo:

Download VCF
File: ERS1176574_UKFCACC7_filtered.vcf.gz
Size: 174 MB